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You're obviously set but you can probably fine tune this list just a little bit.
Remove all these lower tier OOS schools(a 41 has a good chance of being perceived as low yield by them for these schools). You can scratch, Tufts, Temple, and WVU doing this. Ditch Washington(you aren't from one of the WWAMI). There's no real need for Florida or Indiana either unless something really attracts you to these schools. Might as well apply to all three of the Ohio "backup" programs in Toledo, NECOM and Wright State or at least pick the one that has the lowest tuition or track record of giving the most merit money.
Doing all this I count 8 medium tier schools with 34-35 MCAT medians(including 3 IS), your backup state program and 12 of the big name reaches. I think you'll do just fine with that. I second what Goro said to add the CA schools. Might be worthwhile to throw Baylor, Mayo, Hofstra, and the Manhattan Titans an app as well. You're probably more likely to want to attend one of these than Indiana, or Temple or WVU anyway.
As for MD/PhD your GPA is around 0.2 below the median MD/PhD matriculant and the competition is alot more fierce but you look to be in pretty steady hands there as well for a variety of programs.
Sigh. He's applying MSTP, so merit aid isn't a factor. U. Washington does take OOS MD-PhD students. Please don't give this kind of advice if you aren't confident you know what you're talking about.
OP, 3 first-author pubs and a 41 makes you a crazy rockstar for MSTP. See those top 15 schools on the US News list? Coincidentally, that's your list too. Add your OH schools if you want to stay near home. See you at Duke.
I didn't think there was a clear MD designation for your main paragraph, but I softened my post when I read it more carefully. Thus the edit prior to yours.I was talking MD only. I pretty clearly made a separate sentence referring MD/PhD in the last sentence.
The "backup" programs for the OP which is really where that comment came from, ie lower tier options of Ohio like Toledo, aren't MSTP funded.