I was researching the same question because I'm in the same boat. Not really any answers out there, I think this is a pretty unique situation.
I have a 3.3 cGPA, 3.0 AO GPA, and 3.8+ sGPA with a 35+ MCAT score. I am applying this cycle, and am doing alright so far getting interviews, though obviously no acceptances yet and I haven't heard back from most places one way or another...
You can view my MDApps later on in the cycle to see what's become of me.
To anyone in this boat thinking about applying, I would do it. Ace your MCAT, figure out your "awesome factor", apply early, apply broadly, and pray.
I'm curious to hear other people's experiences who go through the process with high sGPA, low cGPA.