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1 semester of 2.6 + 8 semesters of, say, 3.7 averages out to a 3.6
So no, you're not ruined! It is also clearly visible on AMCAS that the first low grades were from high school duel enrollment, so if you do well throughout college they will understand what has happened.
However, BME as a Hopkins pre-med is about as difficult a path as you could possibly choose for this process. Hitting consistent A- (or better) semester averages is one hell of a feat. Good luck!