Firstly, when you say carbonyl, note that it can either be a ketone or an aldehyde. So I think you're trying to ask why the hydrogen from the aldehyde is more acidic than the ketone?
The only difference between these is that the aldehyde has a hydrogen attached, while the ketone has an alkyl group attached. In general, alkyl groups offer less stability the anions as opposed to Hydrogens (The opposite is also true: for cations, the alkyl groups stabilize the cations). Thus, the anion formed from the ketone is less stable than that of the aldehyde, meaning that the ketone is not as acidic (Greater pH, greater pKa).