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Sorry, but graduate GPA's don't count, as they are calculated separately (and don't factor into the interview equation). The improved MCAT will help, however.
This is incorrect information. While graduate GPA's are calculated separately, doing well can help you. The upward trend from senior year and your graduate gpa will help you land interviews. There is a reason why those SMP programs continue to send a number of students to med school each year. You may not have a chance at a top ten med school but you will get into one, maybe even a top-tier is your EC's and LOR's are really good and you do really well on the interview.
With your good grad. gpa and improved mcat, you def. have a better shot.
Put it this way, I don't see how an improved graduate GPA can hinder you.