Yeah...I agree with Shy. I think this is a grey area (I've yet been able to definitively find an answer) and it sucks, but technically you have already "applied." But, it's really not that big of a deal. Most schools don't ask if you are a re-applicant. A few schools ask if you've ever applied to medical school before and a few ask if you've specifically applied to their school in the past.
At this point in the game, if you haven't done so already, it's on the later side for submitting secondaries, so you might be better off not submitting them and then applying as early as possible next application cycle (read: June). As long as you have some things to add to your primary (i.e. more grades, ECs, etc) you'll be much better positioned for next app cycle than you are by applying "late" just to avoid being labeled a "re-applicant."
just my two cents...