well the university program is taught at CASE and is the traditional case medical school. The MD/PhD program is also taught at CASE. The college program is at the Cleveland Clinic and is basically a totally different school. But, since the Clinic is not a degree granting institution, they needed a school to back them up (like Mayo and U of Minn). So it is a marriage of convenience (the clinic kicks some NIH research money back to case in exchange).
We take all of our classes separately from the CASE kids. It is a 5 year program where there is a dedicated research year. You get an MD with special qualifications in research, or you can get an MS if you want to take a few extra classes. Its made to train "physician investigators" we start early and have 10 weeks of basic science research to start, we then have a regular first year. Our second summer we do a clinical research project and take epi/biostats. We then have a normal second year like any other school, take the boards after 2nd year. Our 3rd-5th years are then like most schools except 12 of those months are dedicated to research. It can be basic, translational, clinical, or a combination. It can be all at once or broken up however you want. You can do it at the clinic or go to the NIH or go anywhere else that you want to do it as long as you can arrange it. You then write a thesis based on your research and finish in 5 years. There are no exams and no grades and we have a portfolio grading system.
Hope this helps