Ah, right, gases will mix and molecules still move at a decent pace, but there is a slight decrease in the rate of gas effusion. Emphysema patients purse their lips to increase resistance to flow in order to increase intra-luminal pressure, thus preventing airways from collapsing; here, the size of the outlet itself remains the same, but there is more matter inside the tube, thus greater intra-luminal pressure. That sound right?
I guess the other issue that comes up is what to do if CO2 starts to accumulate in alveoli anyway. Since the rate of ventilation is more important in this sense than the positive pressure, one could increase the rate to blow off more CO2.