Hahaha...I'm being called out!
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A lot of good points by Fusion, by the way.
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I'm a little reluctant to rate these because some of the criteria will conflict.
If you want the highest probability of being accepted into med school for the following year, Rosalind Franklin's MS in Applied Physiology is the best option. EVMS sounds similar, but the program is so darn small that it's hard to say.
If you want to improve your credentials to apply after completing one year in the program, I would say G-town and BU rival for the top position (I would give a slight edge to G-town, but Boston U definitely has its advantages such as the thesis).
If you are a borderline applicant (e.g., 3.4 cume, 3.3 bcpm, 30 MCAT) and you are applying to many med schools while doing an SMP-type program, I think Georgetown is the best option because it's on a block system as opposed to the traditional semester system.
If career options are a major concern, the programs that allow you to do a laboratory thesis will probably provide you with the most options. These would include BU MA in Medical Sciences, UMDNJ MS in Biomedical Sciences, Drexel Master of Medical Sciences (IMS + research), and VCU's MS in (one of the pre-medical certificate tracks).
If cost is a major concern, UMDNJ is a better option than BU, Georgetown, and Rosalind Franklin. If you want to take courses with med students and cost is an issue, here's a program that not too many people are familiar with: Creighton's MS in Biomedical Sciences. I know one person on SDN is in the program, took a few medical courses, paid no tuition, AND got a stipend. The big downside is that Creighton's med school pays more attention to undergrad grades, so the MS in Biomedical Sciences program does not have a strong linkage to the med school. Also, you need a solid background in research to get full tuition remission and a stipend.
So as you can see I think it's hard to rank them. I can give you my opinions on some strengths and weaknesses, from what I've gathered, but again, I'm reluctant to rank 'em in order.
However, if you're looking for something more like this:
Rosalind Franklin
Quality of Courses: Excellent; the courses include most of Chicago Medical School's MS-1 courses with a few exceptions (e.g., Gross Anatomy)
Reputation: The program isn't known for getting you into other med schools, but is very strong for getting you into Chicago Medical School. A lot of people say bad things about CMS, but the clinical training and reputation isn't as bad as most people think. The residency placement is pretty good (see match list).
Tie to Medical School: Strongest of any SMP. The possible exception is EVMS, but EVMS's program is much smaller.
% matriculation in previous classes: Students who perform well usually matriculate to CMS. Some get acceptances elsewhere. There is no glide year. Other programs like BU and Georgetown claim success rates around 85%, but this typically includes a glide year.
Cost: Ouch. $52k estimated cost for tuition and living expenses for the year. If you matriculate into CMS, you'll pay four more years at about the same cost.
Alternative Career options: Minimal. The degree is an MS-in-I-want-to-go-to-Medical-School. It is good at what it is intended for, but not much else.
That's probably doable, but it would take quite a bit of work.
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