My wife just graduated from SUNY Upstate med school and is glad she got the heck out of there. To give you an example of some of the crap they pull: in the middle first semester of this year, they decided to retroactively raise tuition for that semester by $2000 (without, I believe, additional financial aid to cover it) because NY has one of the most useless state legislatures in the country and they (once again) passed a late budget with no foresight. New York state is in big financial trouble and I would predict that tuition at the state med schools will increase dramatically because of it. Her graduation speaker even said something to the effect of "You have SUNY in the name but let's not pretend that the state spends much money to support this school or that it will spend any money on it in the future."
I would also wager that the private schools in NY will be in some trouble because the NY legislature's next big target will probably be medicaid (even more so than it's already been). Moral of the story: avoid NY state.