1. You're going to get people asking why you're going for PharmD and not a PhD. Know the answer. (I'm still getting the same thing, as I'm applying to dual degree programs and am interested in working in the industry.)
2. Look for schools that also have a strong graduate program, academic medical center, or other attributes that might indicate they are research oriented. Generally large public schools will probably have these.
The schools that come to my mind first are:
UCSF: they have 3 separate tracks to focus on and one of those is research
Michigan: I believe you are required to complete a research project
As well as Washington, Purdue, Wisconsin, Minnesota, Maryland, Texas, Florida, etc.
I found this thread very helpful when I started my school search:
http://forums.studentdoctor.net/showthread.php?t=628925&highlight=research+oriented+schools
I'll be applying this summer/fall. If you have any questions that you think I might be able to help you with, please ask.
Good luck!