Academic Article Management Software

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DeadCactus

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Anyone have a good system for storing, reading, annotating, and citing articles in an electronic format? Preferably something that has both iPad and desktop access and syncs between the two. I was looking at Papers but also came across Paperpile which might work well if there is a second party iPad annotation app that plays well with it.

Anyone use anything besides skim the physical journal and then put it in a cylindrical file?
 
I like Read by QxMD as well, but I don't do a ton of annotating. I feel like its best utility is keeping up with various topics maybe moreso than storage.

I also had a cool desktop program that was eventually going to be made into an app. It was a major document databasing program called DevonThink. It could tag by key words, annotate, search handwritten notes as well. But as powerful as I think that could've been, I never really took off with it. Pretty large time commitment up front getting things organized. Just wound up saving articles in folders by subject.