Found this little explanation, it might help. The rest is from the link, with a couple of underlined bracketed comments by me.
Relation between pressure, velocity and area
So your problem is with P=F/A. Well, there's no problem with it. What is
really wrong with your thinking is that you're not
paying attention to the equation:
the force changes too.
Let's recap what happens in your situation:
[referring to the diagram below]
- There's a change in cross-sectional area: A2 < A1;
- Thanks to conservation of mass, (1) implies v2 > v1
- Thanks to Bernoulli, (2) implies p2 < p1
The dark blue rectangle on the left is what we call an
element. Like the rest of the flow in the bigger section, it flows with velocity v1. It is delimited left and right by faces with area A1. Note that, since the liquid left and right of it has pressure p1, this element is
compressed by forces F1=p1*A1 on each side.
[notice the rearrangement of P = F/A]
Now to the element on the smaller section, which flows faster. Its cross-sectional area is smaller. The pressure left and right of it is also smaller. As a result, the forces compressing it, F2=p2*A2, are also smaller.
So, P=F/A still holds. Yes, when the situation changes, A is smaller, which by itself would make P bigger. However, as we saw above, then new F is smaller than the old one too, which by itself would make P smaller. The net effect of p2 > p1 (which we know beforehand from Bernoulli) means, therefore, simply that F has diminished more than A did.