Do the chemo. Its a sensitive area and you are giving a lot of dose. If they fail after those doses wound healing can be a nightmare. I have had 2 of these cases come back to bite me. They can be deceptively aggressive.
HPV or not, if it is a true skin cancer (as in not involving the anal mucosa at all) I would also strongly consider using a cis-based regimen instead of MMC. Its worth reminding, the issue with the older cis trial in true anal cancers was the probably the use of induction in the cis arm and not the MMC arm. ACTII showed cis/FU was just as effective and had less hematologic toxicity. Still one of the more curious conclusions: the experimental arm was as effective, and less toxic, but since it required an extra infusion the control arm should remain SOC. If you are debating whether it is a skin primary or not, probably worth hedging and giving Cis