I was in the same boat. I completed the 10 week schedule about 4 weeks before the test and ended up going through two thirds of the questions in EK Chem 1001. I went through once doing every third problem for each section (jumping sections, not in order), then went back and did every third question again (obviously starting on a new question). I made sure that the order was different each time. This really helped me.
One thing to consider, however, is that when time was called for the PS section in the morning, I considered voiding my exam. The first 35-40 or so questions were easy and I was ahead of time, but the next thing I knew, I looked at my watch and I had 15 minutes for 20 or so questions. I have no idea what happened, I was regularly finishing practice exams with time to spare, scoring from 11-14. I answered all the stand alone questions remaining and did my best to skim the remaining two passages while spending the most time reading their question stems. I thought this was going to be my worst section but it ended up being my best (seems like that happens to quite a few people). My score was inside my practice range, so I am happy.
I think the best thing you can do is complete as many problems from the EK sections you struggle with on the online AAMC reports. For me, these sections were ones I thought I was strong in, but the online reports don't lie. Use the two in conjuction and you'll be well prepared!
My best piece of advice: The AAMC practice tests were an accurate reflection of my actual score, but not of the difficulty or knowledge depth required by the real exam. Don't let it get in your head early!
Good luck,
Adam