take what i add with a grain of salt as I'm a med student as well, but I've been doing a bit of research in MRI/PET and as far as I know:
The future of molecular imaging is in PET with new tracers being phased into clinical practice (thus far only FDG, glucose analogue, has found widespread clinical use, but soon new radiopharmaceuticals will be used making it possible to visualise other processes)
for brain MR at least, perfusion and diffusion sequences are becoming very routine, with DTI (tractography) entering clinical use. things like fMRI are still only used in research although may begin to be phased in for high risk neurosurgery