I have a question. Does Johns Hopkins send you a secondary application after reviewing AAMCAS, or are you expected to fill out their online information? It's really not very clear online, and I haven't heard anything from them yet......
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I filled out their secondary (7/3) before my AMCAS was transmitted to them (~1 week). Also, I had already sent my LOR's at the end of June. They sent me an email verifying that my application was complete on 8/9.
My advice is to fill out their app ASAP. The app is on their website for their med school under admissions.
They will eventually send you a postcard acknowledging your AMCAS application and asking you to complete their secondary application. But don't wait for it. Just go their website and fill it out and get it in.