I got a B in Org chem I and a C in Org chem II and I got accepted. It has been 8 years since Org chem I and since then I have set myself apart in other ways. My overall GPA is above 3.4, high PCAT score, good ECs, good letters of recommendation and an advanced degree.
Admissions committees look at the entire application; getting two Cs is not the end of the road.
Best of luck to you.