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Hey...how often did you actually do these during M3? All I've done so far is observed them with a group of students. I wouldn't even know what to feel for. And I think a patient would sense my ineptitude if I tried doing one. And what about breast and testicular exams...
You are never wrong in doing a rectal exam as part of the physical exam. It's just not necessarily a part of the exam focused on a given, non-GI or oncology associated chief complaint. When someone has a staph abscess on his arm, it's hard to explain to him why you are doing it. But no attending or resident would have a problem with you doing it, some insist on it, and there's a place for the results on every H&P form.