Hi OP,
First of all, congratulations on your decision to pursue medicine.
I wanted to suggest you take a serious look at NYIT. I know most of us, especially with research backgrounds, feel there are more research opportunities at MD schools but don't overlook what is on offer at some DO schools. NYIT has a program that in exchange for a research year (i.e. a 5th year of medical school) students receive a 50% scholarship for their entire medical education. Research is already a strength of yours, and I believe you might be interested in the NY area, so this kind of tuition reduction is nothing to sneeze at.
None of the postings above are personal and you shouldn't get too wrapped up in these sorts of forums, but there is wisdom to be gleaned if you can sort signal from noise. I wish I'd done as you and others have done and posted my background (and school list when you have it) here prior to applying. A few people, including my mentors and a pre-med advisor told me that with a PhD and a 520+ MCAT I'd have no problem getting into medical schools. However, my uGPA wasn't anything to write home about (3.6) and, of greater concern, the bulk of my clinical volunteering was a few years old (pre-PhD) and I was light on shadowing primary care providers (make sure to do this too and don't just shadow surgeons or other specialists). You will thank yourself later. Best of luck!