Be proactive. E-mail program coordinators and inform them that a new transcript has been loaded onto ERAS and ask them to place it in your file and to send it to the PD as well. If this is pre-interview, do as above, and if it really is a huge difference, find a way to non-chelantly bring it up during an interview. I did this when my Step 2 score came out. "Oh, did my Step 2 score make it to my file".