I think it is more important to be able to competently discuss your research publications and your role in their related projects than the journal IF at this point in your career. In the grand scheme of things, one IF 15+ publication will probably not eclipse your GPA and MCAT, unless it is in the caliber of Science or Nature, or something like that. Even then, I think med schools will be more interested in seeing how well you understand the scientific process by asking you specific questions about your projects. Same goes for MD/PhD programs I would imagine, since some programs do not even require a publication, but rather just a strong research experience.
Do not worry too much about impact factor at this point.
As a personal example, I have a few publications, two of which are in IF 10+ journals. It certainly does not feel that these have made me significantly better off than some of my friends who did not have such publications AND were equally, if not more, successful med school applicants.