I don't see what advice anybody could offer here for your situation. Beyond contacting the school as suggested above, did you write an email to you adviser asking about your situation?
It looks from your other posts that you're applying to multiple medical schools. Don't most combined programs put you into the regular applicant pool if you apply to other places? The only thing you can do with regards to program if you've already contacted them is wait. I remember seeing this thread when you first posted and assumed, like Pietachok, that you missed the deadline because you were not entrenched in the application process. If you were actually doing other applications, I think it puts your missed deadline in a more negative light and you definitely need to reach out to your program adviser to figure out what, if anything, you can do. You should have some sort of combined degree adviser, no?