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We learned in my intro to shelter med class that it is standard practice for most TNR programs to clip the left ear when the animal has been sterilized. This allows for quick ID from a distance if the animal is trapped again. It prevents potential stress to the animal because it can be immediately released and increases safety of the TNR workers because that is one less feral cat that needs to be handled unnecessarily. Tattoos and microchips require the worker to handle the animal whereas ear clipping does not.
I do not know if you are referring to my post or not, but in the case I saw, but the tattoos were applied post-surgery while the animals were still under anesthesia.
I am not sure if they continue that practice or not, because it was several years ago when the program was new and new to the area.
Interesting to know why most TNR groups prefer the ear notching! I was wondering why they did it. The vets made it seem to me like there was a potential for it to be slightly more problematic. Then again, they could have been talking about taking the tip off of the ear. It was a long time ago, so I forget. 😳