I don't know much about MWU, so I didn't comment on it. I'm not at all saying that MWU isn't a good school. California is kind of a bubble so I don't know many out-of-state schools very well by reputation and I have no experience with students from there. I believe I have heard good things about them, but I really have had no interaction with anyone from there. I'm only commenting on UW and UCSF because I have had much more experience with people from these programs. Generally, when I say newer programs that I generally look upon disfavorably, I'm referring to those opened in the last couple of years (e.g. Cal Northstate, West Coast University, Chapman, Keck Graduate Institute) etc...you might have heard of some of them if you're familiar with the pharmacy school situation in California.
To answer your question though, I generally don't see myself disqualifying anyone solely based on where they went to school unless I just had no time to go through applications...then I might toss out some based on school. I'm happy to consider candidates from a program I know nothing about, but wary of the ones from programs that I feel are questionable. I'd wonder why anyone would attend a new program with no reputation over those with a long history of excellence (many of which are state schools with low tuition); my guess would be that they were the least competitive students, so they were accepted at the least competitive schools.