Closing down a facility over a number of years seems insane. Anybody who can leave, will obviously do so. Everybody who can't, because they got nowhere to go, will stay...
As regards AFIP, the strength of the institution was, that it was such a large pathology-centered facility. Breaking it up and putting it in different locations is bound to affect the quality of their people, product and research. In years past, AFIP received tons of consults (probably more than anybody else), not only from the military, but from civilian institutions from around the world. If AFIP as an institution is gone, there'll be no way they'll get that back (then again, I'm sure they've already lost 90% of their non-military consults).
AFIP, Walter Reed & Bethesda Navy was once institutions at or near the top of anybody's list of the best medical institutions in the world. Now, two of them will be closed down, and the third is steadily declining, from what I can gather. Such a shame...