You are being an impatient, anal retentive d-bag. Just chill the hell out.
As has been mentioned multiple times by (the remarkably patient) aPD, filters happen AFTER the download. Programs can only not d/l apps by not logging into ERAS. That's it. If anybody logs into ERAS, every part of every app that has been sent to them gets d/l'd. Then can set up filters not to look at it (and I'd personally set up an oompa loompa filter if I were a PD) but they can't do anything about d/l'ing it.
Program X just hasn't logged back on since your USMLE scores became available. It's quite likely that, this early in the season, they'll log back into ERAS and get your scores to look at. Even Hopkins, UCSF, Stanford, Michigan and Duke haven't filled all of their slots by now. They'll still get a chance to see your Step scores and THEN reject you.