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I don't think you can be accepted with less than a C in organic (I am assuming you passed it at a later time). Have you actually taken the MCAT, or have you just taken practice ones at this point? Because those are two different animals. Less than 3.0 in your sciences will be tough to swing, even if you are prior service. The 3.2 overall probably isn't a show stopper, but you would need to get your science GPA up. I would say do a Master's program, but it won't help your undergrad GPA.
I would agree with the elder. Do the master's thing, do well and you will be there. My overall GPA was 3.3 on the AMCAS but I had one poor year of college 6 years prior to 4 much improved years. I did have poor grade that was overlooked but it was in a non-science, non-major class. Which should be a message to anyone out there don't be stubborn thinking you can pull out a grade...just withdraw and retake it later I still regret not withdrawing from that class even though things worked out.