I'm going to be honest, with a sub-3.0 GPA the odds are stacked against you. I have seen it done, but the odds aren't excellent. The MCAT is excellent (I got the same score 13 VR, 10 PS, 9 BS) and I also have a low GPA 3.238 and science GPA 3.035, but I know that it's important to surpass that 3.0 mark. If you don't get in this cycle, consider a 1-year postbacc or a graduate masters program.
The good news is that you already spent the money so you might as well write stellar essays for those secondaries and get them in AS SOON AS POSSIBLE. You might be pleasantly surprised.
Best of luck to you...I truly hope that you get in and I didn't mean to discourage you. Let us know what happens
PS: I would encourage you to apply to some of the newer DO schools, because they usually (no flames, please) have fewer applicants and thus yield a higher acceptance rate.
Under a 3.0, I definitely would not apply MD even though your MCAT is at their levels... unless, of course, your grandpa is on the admissions committee...