Baylor does would end up giving you a higher board score, though. You know the 1.5 year basic science thing, then you can spend your time afterwards how you like. That gives them a ton of time to study, and that is probably solely the reason they have such high scores (and the smart people)
I donno which school I would choose here. Baylor, the school, is a great school. I would thrive in the type of environment they create, but I'm not sure most people would. I would have love the extremely compressed, and to a big extent, stressfull basic sciences that they do there. I definately think San Diego (the city) is a whole lot better than Houston. I'd probably go to Baylor 7 out of 10 times because I like almost everything else about the school. The women in San Diego are sooooooooo much better looking than Houston.
Ohhh. Wait, you asked for the strength's of UCSD. I wasn't paying attn. Compared to Baylor, Baylor the school would have most of the strengths. UCSD biggest stregths are location, and the fact it would be somewhat easier to get a better residency spot in california from UCSD. But your board scores would end up being ~7 points lower at UCSD (again, because of the time Baylor gives you), so I'm not sure how much of an advantage that would be. Baylor does do a great job setting you up to get the highest score that you can. Probably the best of any school I know of.