I would not worry too much about it. I just survived the circle with a failed PE. To make matter worse, I only learned that I failed the PE 8 days before the ERAS submission deadline so you can imagine how freaked out and worried I was! To make matter worse, because it was so unexpected I was not prepared for it at all. I have only one audition at my favourite and also a very competitive program. So, by then, it is too late for me to do anything but gambled my future.
Fortunately, I have received many interviews and matched to my preferred specialty (IM) at a mid-tiered university program with a fellowship that I want. So, it all worked out for me. Granted, it is not my top 5 choices but I am happy just to get a job. Though I will admit that for 5 weeks post-match day I was in a daze that I matched below my top 5 especially they all sent me follow-up emails of rank to match. LIARS, lots of them!!! Left bad taste in my mouth about all these programs...
In any case, I understand that our circumstance is different and I don't have a health crisis to complicate the calculus but I just want to assure you or anyone who is in similar situations that I survived the failed PE with no passing score until November to submit into ERAS. It is certainly doable!!!
My only words of advice: apply smartly and broadly, don't restrict yourself to only one specialty and, if you can, try to get your letter writers to advocate for you.
LASTLY, don't trust the words of any PDs, aPDs or the chiefs. They ALL LIE, the lots of them, especially, from the DO programs!!!