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How does he teach antibiotic resistance? Is God constantly creating new pathogens to defeat the drug?* What am I missing?
*If yes, does God love the bugs more than he loves us?
This is a serious question.
There's a difference between microevolution aka adaptation and macroevolution. Antibiotic resistance (adaptation) is often transferred between bacteria with plasmids (or gene cassettes, etc). The gene is transferred and incorporated into the host genome. Staph aureus gains methicillin resistance, but this does not cause it to become non-staph aureus. It's just MRSA.
New pathogens aren't continually bring created. They were created with everything else. They adapt to their environment to survive, but bacteria do not become non-bacteria. Aka this is not a creation vs evolution question.
The answer is no, but I'll still answer your final question. No, God doesn't love the "bugs" more than us. SuperDoc put it nicely. In a fallen world, pathogens can be opportunistic, diseases arise, and people die (explained in Genesis). But God showed his love for us in that while we were still sinners, Christ died for us (Romans 5:8).
I would love to explain this more to you, however this is not the proper forum. If you'd like further explanation or more info/questions answered about this topic, please pm me or find me on Facebook. Id be happy to answer your questions.