Thats kinda a loaded question considering the groupthink on SDN is anti-LUCOM but some how they fill their class every year and every student I have spoken to who goes to the school is happy and has stated that they don't have a huge problem with the evangelical roots. Its up to you really but both being fairly new schools, like the above poster said it really depends on you because both will have uphill battles.
Board scores and pass rates will go up as LUCOM gets used to the process and what works, NYIT has a proven product but not a Jonesboro so if both campuses communicate then you're good but if they don't then you're basically in a new school situation like LUCOM.
Choose which you liked best and do as well as you can.