So I called admissions today, and it turns out it's the stupid LOR situation coming back to haunt me. I guess they didn't realize that my app wouldn't be verified due to the missing evaluation, so even though I was told it would be fine to just have him email them the letter, they never even looked at my application.
I guess I should have been more on top of things to make sure I was squared away, but it wasn't an issue for Midwestern, SGU or Kansas State that I was never verified. I just have one transcript, so it's not like verification is a big deal for me. Anyway, they're going to look into it and get back to me probably Monday.